If a (newick) phylogenetic tree file has been provided, the visualisation of the MSA used in the calculations is shown below. The two chosen groups (i.e. ‘ingroup’ / species of interest, and outgroup) are highlighted in the tree. The outgroup, used in the computation or not, is the outgroup, which together with the reference species of interest coalesce at the node of interest, from which the ancestral sequence have been extracted. Most recent common ancestor (MRCA) is highlighted in purple and labeled. The rest of the clades in the alignment are shown in lighter grey. Regardless whether a reconstructed ancestral sequence at a node, or an outgroup, has been chosen as the ancestor, the MRCA will be highlighted.
If an ideogram (often possible to download on the UCSC website, here) has been provided, the distribution of simulated variants is shown across the genome of the species of interest. The grey distribution corresponds to the total amount of simulated variants, whereas the red distribution corresponds to the subset that is overlapping with a corresponding non-gap ancestral sequence. If there is no forced sub-sampling due to lack of ancestral sequence, the distribution will be fully red.
If an ideogram (often possible to download on the UCSC website, here) has been provided, the distribution of derived variants is shown across the genome of the species of interest. The distribution of derived variants across the genome is shown in red.
| Size of ref. genome | Size of reconstructed genome | Fraction covered of ref. genome | |
|---|---|---|---|
| 1 | 274 330 532 | 77 958 442 | 0.28 |
| 2 | 151 935 994 | 37 987 275 | 0.25 |
| 3 | 132 848 913 | 36 075 051 | 0.27 |
| 4 | 130 910 915 | 32 274 536 | 0.25 |
| 5 | 104 526 007 | 25 907 583 | 0.25 |
| 6 | 170 843 587 | 47 162 525 | 0.28 |
| 7 | 121 844 099 | 32 858 558 | 0.27 |
| 8 | 138 966 237 | 37 904 275 | 0.27 |
| 9 | 139 512 083 | 36 146 178 | 0.26 |
| 10 | 69 359 453 | 17 065 690 | 0.25 |
| 11 | 79 169 978 | 18 718 223 | 0.24 |
| 12 | 61 602 749 | 15 604 813 | 0.25 |
| 13 | 208 334 590 | 53 478 776 | 0.26 |
| 14 | 141 755 446 | 35 780 783 | 0.25 |
| 15 | 140 412 725 | 39 746 541 | 0.28 |
| 16 | 79 944 280 | 23 896 868 | 0.30 |
| 17 | 63 494 081 | 7 663 816 | 0.12 |
| 18 | 55 982 971 | 16 121 137 | 0.29 |
| X | 125 939 595 | 20 680 709 | 0.16 |
| No of sim. SNPs | Number of sim. SNPs overlapping ancestral seq. | Fraction of sim. SNPs overlapping ancestral seq. | Number of derived variants | |
|---|---|---|---|---|
| 1 | 19 765 579 | 5 619 130 | 0.28 | 5 711 181 |
| 2 | 10 686 500 | 2 690 329 | 0.25 | 2 902 855 |
| 3 | 10 826 734 | 2 950 754 | 0.27 | 2 836 785 |
| 4 | 9 233 401 | 2 294 649 | 0.25 | 2 461 714 |
| 5 | 7 225 082 | 1 748 983 | 0.24 | 1 925 212 |
| 6 | 13 675 953 | 3 769 846 | 0.28 | 3 625 578 |
| 7 | 9 085 744 | 2 433 730 | 0.27 | 2 454 095 |
| 8 | 10 455 019 | 2 872 672 | 0.27 | 2 913 995 |
| 9 | 10 141 986 | 2 627 113 | 0.26 | 2 780 258 |
| 10 | 5 609 894 | 1 380 983 | 0.25 | 1 414 486 |
| 11 | 5 792 293 | 1 383 048 | 0.24 | 1 492 776 |
| 12 | 5 084 866 | 1 296 574 | 0.25 | 1 240 632 |
| 13 | 13 282 043 | 3 409 273 | 0.26 | 3 858 113 |
| 14 | 9 907 172 | 2 502 715 | 0.25 | 2 686 341 |
| 15 | 9 908 334 | 2 792 934 | 0.28 | 2 870 751 |
| 16 | 6 457 212 | 1 941 028 | 0.30 | 1 843 426 |
| 17 | 3 128 391 | 379 779 | 0.12 | 618 629 |
| 18 | 4 827 969 | 1 399 080 | 0.29 | 1 285 315 |
| X | 5 646 989 | 952 805 | 0.17 | 1 450 650 |
| No. of SNPs | Fraction transitions | Fraction transversions | Fraction CpGs | Fraction non-CpGs (1-CpGs) | |
|---|---|---|---|---|---|
| 1 | 5 619 130 | 0.50 | 0.33 | 0.17 | 0.83 |
| 2 | 2 690 329 | 0.47 | 0.31 | 0.22 | 0.78 |
| 3 | 2 950 754 | 0.46 | 0.30 | 0.24 | 0.76 |
| 4 | 2 294 649 | 0.47 | 0.31 | 0.22 | 0.78 |
| 5 | 1 748 983 | 0.48 | 0.31 | 0.21 | 0.79 |
| 6 | 3 769 846 | 0.47 | 0.30 | 0.24 | 0.76 |
| 7 | 2 433 730 | 0.48 | 0.31 | 0.22 | 0.78 |
| 8 | 2 872 672 | 0.50 | 0.32 | 0.18 | 0.82 |
| 9 | 2 627 113 | 0.49 | 0.32 | 0.19 | 0.81 |
| 10 | 1 380 983 | 0.47 | 0.30 | 0.23 | 0.77 |
| 11 | 1 383 048 | 0.47 | 0.30 | 0.23 | 0.77 |
| 12 | 1 296 574 | 0.43 | 0.27 | 0.30 | 0.70 |
| 13 | 3 409 273 | 0.50 | 0.33 | 0.17 | 0.83 |
| 14 | 2 502 715 | 0.47 | 0.30 | 0.22 | 0.78 |
| 15 | 2 792 934 | 0.51 | 0.33 | 0.16 | 0.84 |
| 16 | 1 941 028 | 0.50 | 0.33 | 0.17 | 0.83 |
| 17 | 379 779 | 0.36 | 0.23 | 0.42 | 0.58 |
| 18 | 1 399 080 | 0.47 | 0.30 | 0.22 | 0.78 |
| X | 952 805 | 0.44 | 0.28 | 0.28 | 0.72 |
##### Table with corresponding data:
| No. of SNPs | Fraction transitions | Fraction transversions | |
|---|---|---|---|
| 1 | 5 711 181 | 0.62 | 0.38 |
| 2 | 2 902 855 | 0.61 | 0.39 |
| 3 | 2 836 785 | 0.60 | 0.40 |
| 4 | 2 461 714 | 0.61 | 0.39 |
| 5 | 1 925 212 | 0.61 | 0.39 |
| 6 | 3 625 578 | 0.61 | 0.39 |
| 7 | 2 454 095 | 0.61 | 0.39 |
| 8 | 2 913 995 | 0.60 | 0.40 |
| 9 | 2 780 258 | 0.61 | 0.39 |
| 10 | 1 414 486 | 0.59 | 0.41 |
| 11 | 1 492 776 | 0.59 | 0.41 |
| 12 | 1 240 632 | 0.60 | 0.40 |
| 13 | 3 858 113 | 0.62 | 0.38 |
| 14 | 2 686 341 | 0.61 | 0.39 |
| 15 | 2 870 751 | 0.62 | 0.38 |
| 16 | 1 843 426 | 0.61 | 0.39 |
| 17 | 618 629 | 0.60 | 0.40 |
| 18 | 1 285 315 | 0.60 | 0.40 |
| X | 1 450 650 | 0.60 | 0.40 |
Number of mutations, fractions, and substitution rates. To make sure the simulation was performed as expected, the leftmost part is the calculated numbers and rates in the parameter files, including the total number of simulated variants per chromosome, based on information from the ancestor and reference species. The middle part is the (re)calculated numbers and rates based on the total number of simulated variants. The rightmost part is the (re)calculated numbers and rates within the subset with a corresponding non-gap ancestral sequence. The comparison of parameters and simulated variants is to make sure that the simulation has been perform as intended, and the comparison between total set and the subset is to make sure that the distribution is the same even if the variants are forced to be down-sampled due to the lack of an available ancestral sequence.
|
Parameter files
|
Simulated variant file
|
Simulated variant file
(filtered for positions with a corresponding non-gap ancestral position) |
||||||
|---|---|---|---|---|---|---|---|---|
| Chromosome considered: 1 | Chromosome considered: 1 | Chromosome considered: 1 | ||||||
| Total mut: 7170871 | Total mut: 16491811 | Total mut: 4680942 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 505899 | 1203850 | 426765 | 1276181 | 2846251 | 912695 | 361871 | 804297 | 258248 |
| 7.05% | 16.79% | 5.95% | 7.74% | 17.26% | 5.53% | 7.73% | 17.18% | 5.52% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 248150 | 210751 | 989195 | 531840 | 526327 | 2144321 | 152110 | 150278 | 611577 |
| 3.46% | 2.94% | 13.79% | 3.22% | 3.19% | 13.00% | 3.25% | 3.21% | 13.07% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 990615 | 212456 | 249134 | 2144933 | 529050 | 530830 | 610382 | 150858 | 151422 |
| 13.81% | 2.96% | 3.47% | 13.01% | 3.21% | 3.22% | 13.04% | 3.22% | 3.23% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 425499 | 1204034 | 504523 | 914575 | 2853705 | 1281103 | 259172 | 808053 | 362674 |
| 5.93% | 16.79% | 7.04% | 5.55% | 17.30% | 7.77% | 5.54% | 17.26% | 7.75% |
| Total CpG mut: 951402 | Total CpG mut: 3273768 | Total CpG mut: 938188 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 85904 | 74336 | 315175 | 285810 | 287296 | 1063586 | 81896 | 82193 | 305085 |
| 9.03% | 7.81% | 33.13% | 8.73% | 8.78% | 32.49% | 8.73% | 8.76% | 32.52% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 315902 | 74029 | 86056 | 1062812 | 288056 | 286208 | 304060 | 82594 | 82360 |
| 33.20% | 7.78% | 9.05% | 32.46% | 8.80% | 8.74% | 32.41% | 8.80% | 8.78% |
| Chromosome considered: 2 | Chromosome considered: 2 | Chromosome considered: 2 | ||||||
| Total mut: 3672736 | Total mut: 24877378 | Total mut: 6779147 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 290738 | 635901 | 202103 | 1903416 | 4245389 | 1362572 | 518953 | 1156129 | 370870 |
| 7.92% | 17.31% | 5.50% | 7.65% | 17.07% | 5.48% | 7.66% | 17.05% | 5.47% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 115062 | 120830 | 471057 | 815280 | 807450 | 3292306 | 222942 | 220328 | 897434 |
| 3.13% | 3.29% | 12.83% | 3.28% | 3.25% | 13.23% | 3.29% | 3.25% | 13.24% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 472120 | 121319 | 114935 | 3291693 | 811040 | 816195 | 896084 | 220431 | 222756 |
| 12.85% | 3.30% | 3.13% | 13.23% | 3.26% | 3.28% | 13.22% | 3.25% | 3.29% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 202636 | 635705 | 290330 | 1364301 | 4258487 | 1909249 | 371824 | 1160551 | 520845 |
| 5.52% | 17.31% | 7.91% | 5.48% | 17.12% | 7.67% | 5.48% | 17.12% | 7.68% |
| Total CpG mut: 508507 | Total CpG mut: 5574701 | Total CpG mut: 1530312 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 43521 | 45666 | 165014 | 485821 | 489656 | 1812178 | 133499 | 134151 | 497871 |
| 8.56% | 8.98% | 32.45% | 8.71% | 8.78% | 32.51% | 8.72% | 8.77% | 32.53% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 165122 | 45358 | 43826 | 1809531 | 489667 | 487848 | 496065 | 134561 | 134165 |
| 32.47% | 8.92% | 8.62% | 32.46% | 8.78% | 8.75% | 32.42% | 8.79% | 8.77% |
| Chromosome considered: 3 | Chromosome considered: 3 | Chromosome considered: 3 | ||||||
| Total mut: 3640054 | Total mut: 33139779 | Total mut: 9021935 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 309247 | 649572 | 192925 | 2508234 | 5591319 | 1793690 | 682582 | 1519603 | 487521 |
| 8.50% | 17.85% | 5.30% | 7.57% | 16.87% | 5.41% | 7.57% | 16.84% | 5.40% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 106426 | 122725 | 439330 | 1105281 | 1095732 | 4461447 | 302292 | 299072 | 1216262 |
| 2.92% | 3.37% | 12.07% | 3.34% | 3.31% | 13.46% | 3.35% | 3.31% | 13.48% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 438987 | 122942 | 107403 | 4462185 | 1098900 | 1106551 | 1214876 | 298901 | 301590 |
| 12.06% | 3.38% | 2.95% | 13.46% | 3.32% | 3.34% | 13.47% | 3.31% | 3.34% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 192458 | 648129 | 309910 | 1795695 | 5606283 | 2514462 | 488510 | 1526165 | 684561 |
| 5.29% | 17.81% | 8.51% | 5.42% | 16.92% | 7.59% | 5.41% | 16.92% | 7.59% |
| Total CpG mut: 524541 | Total CpG mut: 8139034 | Total CpG mut: 2238278 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 43990 | 51599 | 166489 | 709262 | 715752 | 2644626 | 195171 | 196773 | 727322 |
| 8.39% | 9.84% | 31.74% | 8.71% | 8.79% | 32.49% | 8.72% | 8.79% | 32.49% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 166821 | 51850 | 43792 | 2642339 | 715147 | 711908 | 725672 | 196883 | 196457 |
| 31.80% | 9.88% | 8.35% | 32.47% | 8.79% | 8.75% | 32.42% | 8.80% | 8.78% |
| Chromosome considered: 4 | Chromosome considered: 4 | Chromosome considered: 4 | ||||||
| Total mut: 3186288 | Total mut: 40417423 | Total mut: 10816061 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 263128 | 580420 | 177058 | 3061612 | 6823791 | 2188610 | 818492 | 1822016 | 584529 |
| 8.26% | 18.22% | 5.56% | 7.57% | 16.88% | 5.42% | 7.57% | 16.85% | 5.40% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 92614 | 97193 | 380373 | 1346222 | 1335505 | 5436427 | 361840 | 358425 | 1457541 |
| 2.91% | 3.05% | 11.94% | 3.33% | 3.30% | 13.45% | 3.35% | 3.31% | 13.48% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 382430 | 97956 | 94514 | 5438780 | 1338887 | 1349275 | 1457332 | 358645 | 361508 |
| 12.00% | 3.07% | 2.97% | 13.46% | 3.31% | 3.34% | 13.47% | 3.32% | 3.34% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 177049 | 579398 | 264155 | 2190818 | 6839713 | 3067783 | 585380 | 1829549 | 820804 |
| 5.56% | 18.18% | 8.29% | 5.42% | 16.92% | 7.59% | 5.41% | 16.92% | 7.59% |
| Total CpG mut: 377378 | Total CpG mut: 10094791 | Total CpG mut: 2738801 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 32870 | 34198 | 121067 | 880533 | 887388 | 3279398 | 239241 | 240595 | 889546 |
| 8.71% | 9.06% | 32.08% | 8.72% | 8.79% | 32.49% | 8.74% | 8.78% | 32.48% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 121011 | 34799 | 33433 | 3277335 | 886865 | 883272 | 888147 | 240949 | 240323 |
| 32.07% | 9.22% | 8.86% | 32.47% | 8.79% | 8.75% | 32.43% | 8.80% | 8.77% |
| Chromosome considered: 5 | Chromosome considered: 5 | Chromosome considered: 5 | ||||||
| Total mut: 2443703 | Total mut: 45980913 | Total mut: 12200087 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 196998 | 435724 | 137103 | 3480603 | 7758578 | 2488681 | 923711 | 2056708 | 660041 |
| 8.06% | 17.83% | 5.61% | 7.57% | 16.87% | 5.41% | 7.57% | 16.86% | 5.41% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 73508 | 73539 | 303828 | 1532794 | 1521566 | 6191481 | 407321 | 403643 | 1640588 |
| 3.01% | 3.01% | 12.43% | 3.33% | 3.31% | 13.47% | 3.34% | 3.31% | 13.45% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 305103 | 73532 | 73572 | 6195726 | 1525071 | 1536270 | 1641705 | 403554 | 407219 |
| 12.49% | 3.01% | 3.01% | 13.47% | 3.32% | 3.34% | 13.46% | 3.31% | 3.34% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 136769 | 436580 | 197447 | 2489289 | 7773733 | 3487121 | 661185 | 2067224 | 927188 |
| 5.60% | 17.87% | 8.08% | 5.41% | 16.91% | 7.58% | 5.42% | 16.94% | 7.60% |
| Total CpG mut: 287014 | Total CpG mut: 11756383 | Total CpG mut: 3103758 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 25244 | 25034 | 92686 | 1025606 | 1033699 | 3818641 | 271095 | 273039 | 1007736 |
| 8.80% | 8.72% | 32.29% | 8.72% | 8.79% | 32.48% | 8.73% | 8.80% | 32.47% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 93829 | 24955 | 25266 | 3817370 | 1032674 | 1028393 | 1006809 | 272883 | 272196 |
| 32.69% | 8.69% | 8.80% | 32.47% | 8.78% | 8.75% | 32.44% | 8.79% | 8.77% |
| Chromosome considered: 6 | Chromosome considered: 6 | Chromosome considered: 6 | ||||||
| Total mut: 4607080 | Total mut: 56421446 | Total mut: 15080977 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 383652 | 824985 | 239690 | 4237532 | 9445348 | 3029668 | 1133204 | 2523578 | 810414 |
| 8.33% | 17.91% | 5.20% | 7.51% | 16.74% | 5.37% | 7.51% | 16.73% | 5.37% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 134721 | 156281 | 564874 | 1903566 | 1889660 | 7690502 | 509389 | 504839 | 2053995 |
| 2.92% | 3.39% | 12.26% | 3.37% | 3.35% | 13.63% | 3.38% | 3.35% | 13.62% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 562941 | 156657 | 134239 | 7690880 | 1893562 | 1909052 | 2053049 | 504485 | 509772 |
| 12.22% | 3.40% | 2.91% | 13.63% | 3.36% | 3.38% | 13.61% | 3.35% | 3.38% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 240700 | 825162 | 383178 | 3029956 | 9457379 | 4244341 | 809881 | 2531550 | 1136821 |
| 5.22% | 17.91% | 8.32% | 5.37% | 16.76% | 7.52% | 5.37% | 16.79% | 7.54% |
| Total CpG mut: 666984 | Total CpG mut: 14991803 | Total CpG mut: 3992714 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 55122 | 63962 | 213992 | 1307795 | 1318223 | 4869472 | 348357 | 351452 | 1296407 |
| 8.26% | 9.59% | 32.08% | 8.72% | 8.79% | 32.48% | 8.72% | 8.80% | 32.47% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 214706 | 64532 | 54670 | 4868551 | 1316662 | 1311100 | 1295943 | 351074 | 349481 |
| 32.19% | 9.68% | 8.20% | 32.47% | 8.78% | 8.75% | 32.46% | 8.79% | 8.75% |
| Chromosome considered: 7 | Chromosome considered: 7 | Chromosome considered: 7 | ||||||
| Total mut: 3103273 | Total mut: 63492497 | Total mut: 16990408 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 247975 | 542702 | 170984 | 4763448 | 10616902 | 3403016 | 1275863 | 2840710 | 911543 |
| 7.99% | 17.49% | 5.51% | 7.50% | 16.72% | 5.36% | 7.51% | 16.72% | 5.37% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 94669 | 97198 | 398021 | 2146333 | 2129511 | 8669907 | 574682 | 569581 | 2317170 |
| 3.05% | 3.13% | 12.83% | 3.38% | 3.35% | 13.66% | 3.38% | 3.35% | 13.64% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 400016 | 97976 | 95490 | 8672686 | 2135925 | 2152875 | 2316060 | 569207 | 575173 |
| 12.89% | 3.16% | 3.08% | 13.66% | 3.36% | 3.39% | 13.63% | 3.35% | 3.39% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 170534 | 540073 | 247635 | 3406180 | 10625932 | 4769782 | 911799 | 2849674 | 1278946 |
| 5.50% | 17.40% | 7.98% | 5.36% | 16.74% | 7.51% | 5.37% | 16.77% | 7.53% |
| Total CpG mut: 427984 | Total CpG mut: 17006496 | Total CpG mut: 4517013 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 36089 | 37083 | 140081 | 1484317 | 1495181 | 5523429 | 394367 | 397478 | 1466297 |
| 8.43% | 8.66% | 32.73% | 8.73% | 8.79% | 32.48% | 8.73% | 8.80% | 32.46% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 140835 | 37491 | 36405 | 5522902 | 1493955 | 1486712 | 1466396 | 397337 | 395138 |
| 32.91% | 8.76% | 8.51% | 32.48% | 8.78% | 8.74% | 32.46% | 8.80% | 8.75% |
| Chromosome considered: 8 | Chromosome considered: 8 | Chromosome considered: 8 | ||||||
| Total mut: 3776009 | Total mut: 72151819 | Total mut: 19352642 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 305729 | 679134 | 223247 | 5440755 | 12129171 | 3887002 | 1460125 | 3251527 | 1043677 |
| 8.10% | 17.99% | 5.91% | 7.54% | 16.81% | 5.39% | 7.54% | 16.80% | 5.39% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 115794 | 109857 | 455364 | 2420413 | 2401833 | 9776933 | 649898 | 644251 | 2620862 |
| 3.07% | 2.91% | 12.06% | 3.35% | 3.33% | 13.55% | 3.36% | 3.33% | 13.54% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 454583 | 109258 | 115607 | 9778634 | 2408558 | 2427779 | 2618819 | 643767 | 650737 |
| 12.04% | 2.89% | 3.06% | 13.55% | 3.34% | 3.36% | 13.53% | 3.33% | 3.36% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 222552 | 679641 | 305243 | 3891633 | 12139248 | 5449860 | 1043949 | 3261454 | 1463576 |
| 5.89% | 18.00% | 8.08% | 5.39% | 16.82% | 7.55% | 5.39% | 16.85% | 7.56% |
| Total CpG mut: 407679 | Total CpG mut: 18802193 | Total CpG mut: 5027451 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 37300 | 35268 | 131075 | 1641903 | 1653120 | 6105517 | 439302 | 442519 | 1631377 |
| 9.15% | 8.65% | 32.15% | 8.73% | 8.79% | 32.47% | 8.74% | 8.80% | 32.45% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 131503 | 35373 | 37160 | 6105671 | 1651781 | 1644201 | 1632610 | 441847 | 439796 |
| 32.26% | 8.68% | 9.12% | 32.47% | 8.79% | 8.74% | 32.47% | 8.79% | 8.75% |
| Chromosome considered: 9 | Chromosome considered: 9 | Chromosome considered: 9 | ||||||
| Total mut: 3567644 | Total mut: 80320188 | Total mut: 21468040 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 284767 | 635521 | 200869 | 6063549 | 13516249 | 4331274 | 1620725 | 3611982 | 1158546 |
| 7.98% | 17.81% | 5.63% | 7.55% | 16.83% | 5.39% | 7.55% | 16.82% | 5.40% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 107492 | 109814 | 446240 | 2689590 | 2668105 | 10864138 | 719591 | 713370 | 2902273 |
| 3.01% | 3.08% | 12.51% | 3.35% | 3.32% | 13.53% | 3.35% | 3.32% | 13.52% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 446877 | 110495 | 108947 | 10866967 | 2677244 | 2698271 | 2901106 | 713179 | 720690 |
| 12.53% | 3.10% | 3.05% | 13.53% | 3.33% | 3.36% | 13.51% | 3.32% | 3.36% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 199813 | 630881 | 285928 | 4338901 | 13531190 | 6074710 | 1159547 | 3621997 | 1625034 |
| 5.60% | 17.68% | 8.01% | 5.40% | 16.85% | 7.56% | 5.40% | 16.87% | 7.57% |
| Total CpG mut: 430091 | Total CpG mut: 20775810 | Total CpG mut: 5539166 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 37371 | 37488 | 140080 | 1814875 | 1826518 | 6745366 | 484191 | 487655 | 1796979 |
| 8.69% | 8.72% | 32.57% | 8.74% | 8.79% | 32.47% | 8.74% | 8.80% | 32.44% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 140977 | 36788 | 37387 | 6746507 | 1825391 | 1817153 | 1799053 | 486485 | 484803 |
| 32.78% | 8.55% | 8.69% | 32.47% | 8.79% | 8.75% | 32.48% | 8.78% | 8.75% |
| Chromosome considered: 10 | Chromosome considered: 10 | Chromosome considered: 10 | ||||||
| Total mut: 1899213 | Total mut: 84634363 | Total mut: 22530078 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 181966 | 361243 | 102110 | 6386472 | 14236665 | 4563273 | 1699993 | 3788810 | 1215672 |
| 9.58% | 19.02% | 5.38% | 7.55% | 16.82% | 5.39% | 7.55% | 16.82% | 5.40% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 49033 | 60742 | 196522 | 2835571 | 2813035 | 11454891 | 755527 | 749229 | 3047185 |
| 2.58% | 3.20% | 10.35% | 3.35% | 3.32% | 13.53% | 3.35% | 3.33% | 13.52% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 195926 | 60644 | 49339 | 11455594 | 2822358 | 2844659 | 3046091 | 749137 | 756885 |
| 10.32% | 3.19% | 2.60% | 13.54% | 3.33% | 3.36% | 13.52% | 3.33% | 3.36% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 101831 | 358374 | 181483 | 4570211 | 14252598 | 6399036 | 1216482 | 3799689 | 1705378 |
| 5.36% | 18.87% | 9.56% | 5.40% | 16.84% | 7.56% | 5.40% | 16.86% | 7.57% |
| Total CpG mut: 209423 | Total CpG mut: 22071529 | Total CpG mut: 5858111 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 17902 | 21404 | 65597 | 1928087 | 1940546 | 7165726 | 512273 | 515823 | 1900455 |
| 8.55% | 10.22% | 31.32% | 8.74% | 8.79% | 32.47% | 8.74% | 8.81% | 32.44% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 64931 | 21545 | 18044 | 7167658 | 1938644 | 1930868 | 1902503 | 514240 | 512817 |
| 31.00% | 10.29% | 8.62% | 32.47% | 8.78% | 8.75% | 32.48% | 8.78% | 8.75% |
| Chromosome considered: 11 | Chromosome considered: 11 | Chromosome considered: 11 | ||||||
| Total mut: 1972571 | Total mut: 89133737 | Total mut: 23595009 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 174199 | 368596 | 109370 | 6734802 | 15012487 | 4812334 | 1782047 | 3971393 | 1274204 |
| 8.83% | 18.69% | 5.54% | 7.56% | 16.84% | 5.40% | 7.55% | 16.83% | 5.40% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 56549 | 60900 | 216125 | 2980604 | 2956727 | 12039076 | 790119 | 783435 | 3186947 |
| 2.87% | 3.09% | 10.96% | 3.34% | 3.32% | 13.51% | 3.35% | 3.32% | 13.51% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 215726 | 60692 | 56248 | 12039497 | 2965957 | 2989398 | 3186042 | 783660 | 791372 |
| 10.94% | 3.08% | 2.85% | 13.51% | 3.33% | 3.35% | 13.50% | 3.32% | 3.35% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 110742 | 368394 | 175030 | 4820086 | 15033232 | 6749537 | 1275037 | 3983216 | 1787537 |
| 5.61% | 18.68% | 8.87% | 5.41% | 16.87% | 7.57% | 5.40% | 16.88% | 7.58% |
| Total CpG mut: 214177 | Total CpG mut: 23364448 | Total CpG mut: 6176228 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 19167 | 20803 | 66906 | 2040685 | 2054515 | 7585755 | 539830 | 543857 | 2003833 |
| 8.95% | 9.71% | 31.24% | 8.73% | 8.79% | 32.47% | 8.74% | 8.81% | 32.44% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 66913 | 20884 | 19504 | 7587718 | 2052418 | 2043357 | 2005822 | 542238 | 540648 |
| 31.24% | 9.75% | 9.11% | 32.48% | 8.78% | 8.75% | 32.48% | 8.78% | 8.75% |
| Chromosome considered: 12 | Chromosome considered: 12 | Chromosome considered: 12 | ||||||
| Total mut: 1607400 | Total mut: 92735053 | Total mut: 24502303 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 150180 | 307166 | 75675 | 6985055 | 15567981 | 4990833 | 1844802 | 4110962 | 1318585 |
| 9.34% | 19.11% | 4.71% | 7.53% | 16.79% | 5.38% | 7.53% | 16.78% | 5.38% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 40605 | 60874 | 170238 | 3115133 | 3090799 | 12582619 | 824496 | 817508 | 3324592 |
| 2.53% | 3.79% | 10.59% | 3.36% | 3.33% | 13.57% | 3.36% | 3.34% | 13.57% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 171115 | 61234 | 40611 | 12584839 | 3100258 | 3124244 | 3324046 | 817746 | 825313 |
| 10.65% | 3.81% | 2.53% | 13.57% | 3.34% | 3.37% | 13.57% | 3.34% | 3.37% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 75730 | 305055 | 148917 | 4999195 | 15592840 | 7001257 | 1320041 | 4123588 | 1850624 |
| 4.71% | 18.98% | 9.26% | 5.39% | 16.81% | 7.55% | 5.39% | 16.83% | 7.55% |
| Total CpG mut: 243951 | Total CpG mut: 24847998 | Total CpG mut: 6565508 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 19467 | 28049 | 74205 | 2170213 | 2185202 | 8067219 | 573994 | 578360 | 2129750 |
| 7.98% | 11.50% | 30.42% | 8.73% | 8.79% | 32.47% | 8.74% | 8.81% | 32.44% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 74811 | 28183 | 19236 | 8069978 | 2182663 | 2172723 | 2132706 | 576337 | 574361 |
| 30.67% | 11.55% | 7.89% | 32.48% | 8.78% | 8.74% | 32.48% | 8.78% | 8.75% |
| Chromosome considered: 13 | Chromosome considered: 13 | Chromosome considered: 13 | ||||||
| Total mut: 4777528 | Total mut: 103737311 | Total mut: 27327307 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 308486 | 772525 | 289471 | 7838691 | 17471719 | 5601367 | 2063717 | 4599508 | 1475323 |
| 6.46% | 16.17% | 6.06% | 7.56% | 16.84% | 5.40% | 7.55% | 16.83% | 5.40% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 177431 | 138909 | 701665 | 3467354 | 3440080 | 14005578 | 915183 | 907540 | 3692168 |
| 3.71% | 2.91% | 14.69% | 3.34% | 3.32% | 13.50% | 3.35% | 3.32% | 13.51% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 701296 | 139933 | 177233 | 14007127 | 3451226 | 3478120 | 3691477 | 908647 | 915973 |
| 14.68% | 2.93% | 3.71% | 13.50% | 3.33% | 3.35% | 13.51% | 3.33% | 3.35% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 289835 | 772138 | 308606 | 5614577 | 17502230 | 7859242 | 1476944 | 4611412 | 2069415 |
| 6.07% | 16.16% | 6.46% | 5.41% | 16.87% | 7.58% | 5.40% | 16.87% | 7.57% |
| Total CpG mut: 657042 | Total CpG mut: 27127783 | Total CpG mut: 7149777 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 60058 | 47466 | 220569 | 2369666 | 2384831 | 8808051 | 625071 | 629546 | 2319596 |
| 9.14% | 7.22% | 33.57% | 8.74% | 8.79% | 32.47% | 8.74% | 8.81% | 32.44% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 221423 | 47361 | 60165 | 8810395 | 2382704 | 2372136 | 2322776 | 627563 | 625225 |
| 33.70% | 7.21% | 9.16% | 32.48% | 8.78% | 8.74% | 32.49% | 8.78% | 8.74% |
| Chromosome considered: 14 | Chromosome considered: 14 | Chromosome considered: 14 | ||||||
| Total mut: 3369919 | Total mut: 111447671 | Total mut: 29273663 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 257088 | 579335 | 185663 | 8407725 | 18740570 | 6007954 | 2207342 | 4920095 | 1578043 |
| 7.63% | 17.19% | 5.51% | 7.54% | 16.82% | 5.39% | 7.54% | 16.81% | 5.39% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 107023 | 107181 | 447488 | 3733359 | 3703715 | 15080241 | 982140 | 974190 | 3963720 |
| 3.18% | 3.18% | 13.28% | 3.35% | 3.32% | 13.53% | 3.36% | 3.33% | 13.54% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 448540 | 107595 | 107987 | 15082830 | 3715803 | 3744645 | 3962691 | 975273 | 982988 |
| 13.31% | 3.19% | 3.20% | 13.53% | 3.33% | 3.36% | 13.54% | 3.33% | 3.36% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 184778 | 579524 | 257717 | 6023839 | 18775483 | 8431507 | 1580597 | 4933076 | 2213508 |
| 5.48% | 17.20% | 7.65% | 5.41% | 16.85% | 7.57% | 5.40% | 16.85% | 7.56% |
| Total CpG mut: 521313 | Total CpG mut: 29324595 | Total CpG mut: 7706136 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 43396 | 43910 | 173451 | 2561516 | 2578414 | 9521382 | 673839 | 678659 | 2499906 |
| 8.32% | 8.42% | 33.27% | 8.74% | 8.79% | 32.47% | 8.74% | 8.81% | 32.44% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 172705 | 43907 | 43944 | 9524194 | 2575025 | 2564064 | 2503229 | 676358 | 674145 |
| 33.13% | 8.42% | 8.43% | 32.48% | 8.78% | 8.74% | 32.48% | 8.78% | 8.75% |
| Chromosome considered: 15 | Chromosome considered: 15 | Chromosome considered: 15 | ||||||
| Total mut: 3602395 | Total mut: 119733534 | Total mut: 31617881 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 251610 | 606895 | 218961 | 9053157 | 20176380 | 6467574 | 2390300 | 5329468 | 1708504 |
| 6.98% | 16.85% | 6.08% | 7.56% | 16.85% | 5.40% | 7.56% | 16.86% | 5.40% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 126033 | 101950 | 493603 | 3997791 | 3966430 | 16149453 | 1056395 | 1048246 | 4264896 |
| 3.50% | 2.83% | 13.70% | 3.34% | 3.31% | 13.49% | 3.34% | 3.32% | 13.49% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 494121 | 102382 | 125047 | 16150327 | 3978760 | 4009740 | 4263245 | 1049365 | 1057691 |
| 13.72% | 2.84% | 3.47% | 13.49% | 3.32% | 3.35% | 13.48% | 3.32% | 3.35% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 218780 | 610525 | 252488 | 6485793 | 20219832 | 9078297 | 1711266 | 5342032 | 2396473 |
| 6.07% | 16.95% | 7.01% | 5.42% | 16.89% | 7.58% | 5.41% | 16.90% | 7.58% |
| Total CpG mut: 456863 | Total CpG mut: 30947066 | Total CpG mut: 8154852 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 42308 | 35225 | 150891 | 2703503 | 2721198 | 10048075 | 713085 | 718029 | 2645571 |
| 9.26% | 7.71% | 33.03% | 8.74% | 8.79% | 32.47% | 8.74% | 8.80% | 32.44% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 150376 | 35558 | 42505 | 10050245 | 2717735 | 2706310 | 2649084 | 715813 | 713270 |
| 32.91% | 7.78% | 9.30% | 32.48% | 8.78% | 8.74% | 32.48% | 8.78% | 8.75% |
| Chromosome considered: 16 | Chromosome considered: 16 | Chromosome considered: 16 | ||||||
| Total mut: 2353352 | Total mut: 125136983 | Total mut: 33231571 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 177600 | 398557 | 137065 | 9473388 | 21114078 | 6767933 | 2514740 | 5607076 | 1797718 |
| 7.55% | 16.94% | 5.82% | 7.57% | 16.87% | 5.41% | 7.57% | 16.87% | 5.41% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 78630 | 71906 | 308940 | 4171901 | 4139430 | 16852294 | 1109073 | 1100645 | 4476582 |
| 3.34% | 3.06% | 13.13% | 3.33% | 3.31% | 13.47% | 3.34% | 3.31% | 13.47% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 308511 | 72022 | 77257 | 16851203 | 4151074 | 4183306 | 4474912 | 1101424 | 1110144 |
| 13.11% | 3.06% | 3.28% | 13.47% | 3.32% | 3.34% | 13.47% | 3.31% | 3.34% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 138294 | 406902 | 177668 | 6784889 | 21150775 | 9496712 | 1800011 | 5618647 | 2520599 |
| 5.88% | 17.29% | 7.55% | 5.42% | 16.90% | 7.59% | 5.42% | 16.91% | 7.58% |
| Total CpG mut: 299738 | Total CpG mut: 32000829 | Total CpG mut: 8482190 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 27247 | 25178 | 97747 | 2795391 | 2813576 | 10390721 | 741673 | 746741 | 2752208 |
| 9.09% | 8.40% | 32.61% | 8.74% | 8.79% | 32.47% | 8.74% | 8.80% | 32.45% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 97304 | 25473 | 26789 | 10392773 | 2810340 | 2798028 | 2755258 | 744478 | 741832 |
| 32.46% | 8.50% | 8.94% | 32.48% | 8.78% | 8.74% | 32.48% | 8.78% | 8.75% |
| Chromosome considered: 17 | Chromosome considered: 17 | Chromosome considered: 17 | ||||||
| Total mut: 810302 | Total mut: 126975149 | Total mut: 33453618 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 63918 | 144738 | 44970 | 9606607 | 21410802 | 6862605 | 2530986 | 5643481 | 1809254 |
| 7.89% | 17.86% | 5.55% | 7.57% | 16.86% | 5.40% | 7.57% | 16.87% | 5.41% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 26743 | 28059 | 96690 | 4237039 | 4204305 | 17116491 | 1116862 | 1108409 | 4508050 |
| 3.30% | 3.46% | 11.93% | 3.34% | 3.31% | 13.48% | 3.34% | 3.31% | 13.48% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 97528 | 28131 | 26855 | 17114011 | 4215732 | 4248651 | 4505950 | 1109133 | 1117900 |
| 12.04% | 3.47% | 3.31% | 13.48% | 3.32% | 3.35% | 13.47% | 3.32% | 3.34% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 44820 | 143941 | 63909 | 6879887 | 21448466 | 9630553 | 1811737 | 5654985 | 2536871 |
| 5.53% | 17.76% | 7.89% | 5.42% | 16.89% | 7.58% | 5.42% | 16.90% | 7.58% |
| Total CpG mut: 120720 | Total CpG mut: 33291054 | Total CpG mut: 8639922 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 10697 | 12446 | 37131 | 2908050 | 2927347 | 10809049 | 755619 | 760466 | 2803430 |
| 8.86% | 10.31% | 30.76% | 8.74% | 8.79% | 32.47% | 8.75% | 8.80% | 32.45% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 37128 | 12336 | 10982 | 10811750 | 2923553 | 2911305 | 2806697 | 758234 | 755476 |
| 30.76% | 10.22% | 9.10% | 32.48% | 8.78% | 8.75% | 32.49% | 8.78% | 8.74% |
| Chromosome considered: 18 | Chromosome considered: 18 | Chromosome considered: 18 | ||||||
| Total mut: 1666982 | Total mut: 130762261 | Total mut: 34542476 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 150802 | 316645 | 84028 | 9888940 | 22041003 | 7064896 | 2611564 | 5823536 | 1866974 |
| 9.05% | 19.00% | 5.04% | 7.56% | 16.86% | 5.40% | 7.56% | 16.86% | 5.40% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 42765 | 53489 | 183247 | 4366519 | 4332932 | 17640127 | 1154018 | 1145458 | 4659132 |
| 2.57% | 3.21% | 10.99% | 3.34% | 3.31% | 13.49% | 3.34% | 3.32% | 13.49% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 183580 | 54007 | 43143 | 17634290 | 4344280 | 4378006 | 4656848 | 1146433 | 1155416 |
| 11.01% | 3.24% | 2.59% | 13.49% | 3.32% | 3.35% | 13.48% | 3.32% | 3.34% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 84650 | 318468 | 152158 | 7081459 | 22077579 | 9912230 | 1869670 | 5835674 | 2617753 |
| 5.08% | 19.10% | 9.13% | 5.42% | 16.88% | 7.58% | 5.41% | 16.89% | 7.58% |
| Total CpG mut: 202245 | Total CpG mut: 34331911 | Total CpG mut: 8950144 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 16753 | 20703 | 63830 | 2998984 | 3019166 | 11147270 | 782556 | 787716 | 2904528 |
| 8.28% | 10.24% | 31.56% | 8.74% | 8.79% | 32.47% | 8.74% | 8.80% | 32.45% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 63895 | 20400 | 16664 | 11149358 | 3014758 | 3002375 | 2907257 | 785513 | 782574 |
| 31.59% | 10.09% | 8.24% | 32.48% | 8.78% | 8.75% | 32.48% | 8.78% | 8.74% |
| Chromosome considered: X | Chromosome considered: X | Chromosome considered: X | ||||||
| Total mut: 1823851 | Total mut: 134936174 | Total mut: 35226480 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 144756 | 315876 | 101715 | 10211562 | 22761833 | 7295313 | 2663718 | 5940795 | 1904163 |
| 7.94% | 17.32% | 5.58% | 7.57% | 16.87% | 5.41% | 7.56% | 16.86% | 5.41% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 62374 | 57207 | 229083 | 4501134 | 4466416 | 18182810 | 1176371 | 1167698 | 4749353 |
| 3.42% | 3.14% | 12.56% | 3.34% | 3.31% | 13.48% | 3.34% | 3.31% | 13.48% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 229993 | 57645 | 62706 | 18176996 | 4477904 | 4513045 | 4746693 | 1168642 | 1177699 |
| 12.61% | 3.16% | 3.44% | 13.47% | 3.32% | 3.34% | 13.47% | 3.32% | 3.34% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 102627 | 314752 | 145117 | 7313110 | 22800195 | 10235856 | 1907220 | 5953455 | 2670673 |
| 5.63% | 17.26% | 7.96% | 5.42% | 16.90% | 7.59% | 5.41% | 16.90% | 7.58% |
| Total CpG mut: 206464 | Total CpG mut: 35804987 | Total CpG mut: 9218945 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 18801 | 17472 | 66953 | 3128098 | 3148439 | 11625359 | 805816 | 811512 | 2991776 |
| 9.11% | 8.46% | 32.43% | 8.74% | 8.79% | 32.47% | 8.74% | 8.80% | 32.45% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 67030 | 17313 | 18895 | 11627995 | 3143938 | 3131158 | 2994840 | 808919 | 806082 |
| 32.47% | 8.39% | 9.15% | 32.48% | 8.78% | 8.75% | 32.49% | 8.77% | 8.74% |